PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24270_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 357aa    MW: 41247.5 Da    PI: 9.6303
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24270_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.9e-1721111198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ ++s   +++ l++p kf++ +g++   s   tl  ++g +W+v l  +k ++ +++ +GW  Fv+ + + +g f+vFk+ ++s+f  +v 
  Neem_24270_f_3  21 FFKIVLTSTLEEKK-LRIPQKFVRMFGHE--LSNAATLIVPNGSRWSVDL--KKDGKNVWFCDGWHAFVQTHSISAGYFLVFKYGKNSRF--LVL 108
                     88999888888887.********999955..8899***************..999999**************************998999..999 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  Neem_24270_f_3 109 IFD 111
                     997 PP

2B346.47.2e-15262353398
                     EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +l p +   ++ +++p +fa+++  +    +   ++++ ++  +++++++ +++ g+++l+kGW++  ++++Lk+gD+++F+l+++++  l+++
  Neem_24270_f_3 262 VILQPRSKYCRD-VYVPSTFAQKFitK--DIK--SIKVQVSDEAEYSLQIC-WRQHGGFFLSKGWSHISQDKKLKVGDICIFELVRKKDILLKLR 350
                     555555555666.99******999543..334..58888888999999996.66667899************************99888878888 PP

                     EE- CS
              B3  96 vfr 98 
                     vf+
  Neem_24270_f_3 351 VFD 353
                     776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2516115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-2417115IPR015300DNA-binding pseudobarrel domain
CDDcd100176.53E-2019111No hitNo description
PROSITE profilePS5086313.90220113IPR003340B3 DNA binding domain
SMARTSM010194.5E-1621113IPR003340B3 DNA binding domain
PfamPF023621.1E-1421111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-16252351IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-16253350IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-12258353No hitNo description
PROSITE profilePS508639.728259355IPR003340B3 DNA binding domain
SMARTSM010195.3E-6260353IPR003340B3 DNA binding domain
PfamPF023621.2E-12267353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASSRGVRPI LANSLAEPPH FFKIVLTSTL EEKKLRIPQK FVRMFGHELS NAATLIVPNG  60
SRWSVDLKKD GKNVWFCDGW HAFVQTHSIS AGYFLVFKYG KNSRFLVLIF DLTACEIDYL  120
CNDKESKNNK QNSEFLVDMD SDKDCVQISE GQFHKMYSPT TQHNQAKPTF STWGIKRNPQ  180
SPVSLEKSKV KRRCGQQRRK NIAQEFVEIN EPNDDQKYDL RDSLAEMGIC ITEKYKLLSE  240
ENSKRLLNIA TSLKPKNPSF IVILQPRSKY CRDVYVPSTF AQKFITKDIK SIKVQVSDEA  300
EYSLQICWRQ HGGFFLSKGW SHISQDKKLK VGDICIFELV RKKDILLKLR VFDELVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1623635225140B3 domain-containing transcription factor VRN1
4i1k_B7e-1623635225140B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024954857.11e-105B3 domain-containing protein At4g01580-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-54B3 family protein