PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23919_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 161aa    MW: 17802.2 Da    PI: 8.8431
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23919_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.61.6e-3449103155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Neem_23919_f_1  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.48546106IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-3348104IPR009057Homeodomain-like
SuperFamilySSF466892.15E-1848104IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-2649104IPR006447Myb domain, plants
PfamPF002493.8E-1051102IPR001005SANT/Myb domain
PfamPF143791.2E-9135156IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MYQPNSVPSS SLVRSNSLVH GQHLDCGSSQ MDPMNGGNNV NNNPSLASKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKVDKK  120
ETGDMLSSLD GSSGMQITEA LKLQMEVQKR LHEQLEACFC P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-2649106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2649106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2649106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2649106158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00628PBMTransfer from PK10342.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449962.11e-110myb family transcription factor PHL7 isoform X1
RefseqXP_006467243.11e-110myb family transcription factor PHL7 isoform X1
RefseqXP_024951354.11e-110myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW06e-73PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLV4UB201e-109V4UB20_9ROSI; Uncharacterized protein
STRINGXP_006467243.11e-109(Citrus sinensis)
STRINGXP_006449962.11e-109(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87532536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-53G2-like family protein