PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23664_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 240aa    MW: 27154 Da    PI: 9.4449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23664_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-0699120223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ Cg++F++++ L+ H+  H
  Neem_23664_f_4  99 RCTTCGTRFKTQEKLRDHMDWH 120
                     6******************887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.53698125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MIPVRPSFCV PVDGGRVVMS KSEPAVQRPT QTIVSKQQHG KIRTCGLNSF VSQQPGLISP  60
STQQKPEAED SIGLEFDPAK LKVRHESVIR ALYADLPRRC TTCGTRFKTQ EKLRDHMDWH  120
VRKNRIANKN KKKLSRHFSP ASSMWLKDAA GANGNSPTPA FSTTDTAEKV KNYEELFAVL  180
ADENQKECAL CMEPFNECYS NETEDWMYRG AVYLNEANAS RRKWYKSMLG RIVHAKCIDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655357.13e-57PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
RefseqXP_020986914.13e-57polyadenylation and cleavage factor homolog 4 isoform X2
RefseqXP_025620357.13e-57polyadenylation and cleavage factor homolog 4 isoform X2
RefseqXP_029145051.13e-57polyadenylation and cleavage factor homolog 4 isoform X2
TrEMBLA0A438JG462e-58A0A438JG46_VITVI; Polyadenylation and cleavage factor-like 4
STRINGPOPTR_0004s01970.15e-57(Populus trichocarpa)