PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23533_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 303aa    MW: 33652.3 Da    PI: 7.9193
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23533_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-391082081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+Cv+apyf a+q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+vg+i +lqqq+ +l+ael
  Neem_23533_f_1 108 PCGACKFLRRKCVKGCVFAPYFDADQgTAHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEALARARDPVYGCVGHIVALQQQVVNLQAEL 202
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  Neem_23533_f_1 203 AYTQAR 208
                     *99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.131107209IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-38108206IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MWRYSTVMTT NLSNNKSETG FLPFRQWNWN WLWDPMSKTV AVFSGHRYSE KRADMEVTGE  60
RNDLIRCIVC IYLCRTWDSH VAAAAAVGSL YCHSPHGDQM NANNGGGPCG ACKFLRRKCV  120
KGCVFAPYFD ADQGTAHFAA VHKVFGASNA SKLLMRIPVH KRLDAVVTLC YEALARARDP  180
VYGCVGHIVA LQQQVVNLQA ELAYTQARLA ILQRLPLPSQ AQSNSPPNLQ SSAELASATE  240
MLSSYNISMH FDPVQPQQLT PADLTSSFNP FDEEVDDGDL RTLAREFVSK YLPGVKIRPS  300
SSD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490937.11e-111PREDICTED: LOB domain-containing protein 19
SwissprotO813228e-73LBD31_ARATH; LOB domain-containing protein 31
TrEMBLV4TDR11e-111V4TDR1_9R
STRINGGLYMA03G02631.12e-84(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-58LOB domain-containing protein 19