PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_23419_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 268aa    MW: 28777 Da    PI: 5.308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_23419_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-05242265123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + C+ C+k+F + s L++H +  H
  Neem_23419_f_1 242 HACKSCSKTFGSESALQSHSKAkH 265
                     67*****************98777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.05242268IPR007087Zinc finger, C2H2
PROSITE patternPS000280244265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEFWGVEVKP GQPLKVKPTF DNIIHVSQAS LGESKKEKGR ESVPLFVKFG DQKLVLGTLI  60
TDSIPQLSFD LVFEKEFELS HNWKNGSVYF CGYQTPLPQD SSDEFDMEDS EEDEEMVLPS  120
IPAENGKAGP KVEKAKAAAP KADAAKPAKP SKDISGEEGG SDEEDEEDSE DEDSDEDEET  180
PKKAVLGKKR PAESATKTPV SAKKAKTPAT DGKKGGHVAT PHPAKQGAKT PNVKTPKSGG  240
QHACKSCSKT FGSESALQSH SKAKHAGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484979.11e-126histone deacetylase HDT1-like isoform X1
RefseqXP_006484980.11e-126histone deacetylase HDT1-like isoform X2
SwissprotQ8LJS22e-73HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLV4UE571e-122V4UE57_9ROSI; Uncharacterized protein
STRINGXP_006484980.11e-126(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-39histone deacetylase 3