PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22647_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 229aa    MW: 26086.4 Da    PI: 10.3255
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22647_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.4e-16131220198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp  f++e+  +k ++  ++l de+g ++   +  rk++    l++GWk F+ a+gL +gD +vF+l++++ f  +v 
  Neem_22647_f_1 131 FVKSMLKSHVTGGFWLGLPGYFCRENL-PK-SDDVISLIDEEGDEYPTIYLARKTG----LSGGWKAFAVAHGLVDGDALVFQLIRSMAF--KVY 217
                     89************************4.32.4458***************656665....*************************99999..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  Neem_22647_f_1 218 IIR 220
                     877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.37E-22124220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-19124220IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-25129220No hitNo description
SMARTSM010198.5E-24131222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28131222IPR003340B3 DNA binding domain
PfamPF023621.1E-13131220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVTAKAKPSY EDCRLRRLEE NKKRMEALNL PMLSQALRKK PSFKSSPMKQ VKPRTVEKKA  60
IALSLRRSSR VAKMPAPVYN EVNRVRVEIP RRIYNRRDLS NRVYASDAAR ADAIEKAEKL  120
ESRLDTECPT FVKSMLKSHV TGGFWLGLPG YFCRENLPKS DDVISLIDEE GDEYPTIYLA  180
RKTGLSGGWK AFAVAHGLVD GDALVFQLIR SMAFKVYIIR GTEEVYLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434799.11e-122B3 domain-containing protein At5g42700 isoform X1
SwissprotQ9FMZ46e-71Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2H5NH511e-121A0A2H5NH51_CITUN; Uncharacterized protein
TrEMBLV4V7F61e-121V4V7F6_9ROSI; Uncharacterized protein
STRINGXP_006434799.11e-122(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-73B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]