PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22535_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 504aa    MW: 55634.7 Da    PI: 8.5825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22535_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-064114491154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Neem_22535_f_2 411 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 449
                     5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-7410454No hitNo description
SuperFamilySSF474591.7E-10410457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0014411455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9414459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MIILCNLKTS EKNQRAREIK IHHQLNIATI KQETSEKNQR AREIKIHHQL NIATIKQQLL  60
YLAMADESNT TTNWWESSRN RFDSGSSSSS SALNNSLGSF GWPTEMVDIK AARSSIDSSA  120
SVSGSSVVFQ DSQKLQQGPD SAGSDLHMMG LGLSSPSLDW YQALVPGDKS GRSFRSMLQD  180
SNANYQQETG MGSSQVQWPR EKVFPGISGD STVTEFKQMS RGFSLDQPQF SPHGSSTDST  240
VKCQGLPSSF QMDSTALYGN PSTIFQGILG SENQPHQSAA SFENRSVNYH YGASTYGMNT  300
SEVLPSWSGN KVPQFSRTSS PKQQPQHTHL HFSNNAPFWN ASAASMNDVR ASGFFPTLQT  360
PYQTQAFDEK PKQIISEVRE SSTAVKKSCG SEPASKRARN ETPSPLPAFK VRKEKMGDRI  420
TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQVHNNSDKS KDNEGPKQDL RSRGLCLVPV  480
SSTFPVTHET TVDFWTPTFG GTFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021136.10.0Basic helix-loop-helix DNA-binding superfamily protein
SwissprotQ8GXT36e-76BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A061F6M70.0A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGPOPTR_0011s13320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-74bHLH family protein