PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22532_a_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 117aa    MW: 13259.4 Da    PI: 8.6884
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22532_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.36.4e-30585988
          DUF260  9 rrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                    r++ + +C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ 
  Neem_22532_a_1  5 RKQLNGGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVG 85
                    5666779*********9989***********************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.463198IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-29585IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MFASRKQLNG GCIFAPYFDS EQGAAHFAAV HKVFGASNVS KLLLHIPVHK RLDAVVTICY  60
EAQARLRDPV YGCVAHIFAL QQQVGYVCIR NKRIMKENNR TCFACQWTEQ YCGFTEI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4632584e-40AM463258.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X156046.15, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467063.12e-48PREDICTED: LOB domain-containing protein 18-like
RefseqXP_010277398.14e-48PREDICTED: LOB domain-containing protein 30-like
SwissprotO221316e-46LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A067HD706e-48A0A067HD70_CITSI; Uncharacterized protein
TrEMBLM1AYU81e-48M1AYU8_SOLTU; Uncharacterized protein
TrEMBLM5X2B08e-48M5X2B0_PRUPE; Uncharacterized protein
TrEMBLV4TY076e-48V4TY07_9R
STRINGPGSC0003DMT4000332533e-48(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-47LOB domain-containing protein 18