PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22147_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 188aa    MW: 21351.3 Da    PI: 9.4506
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22147_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like46.77.1e-15109153154
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     +pr+ W+ eLH++Fv+a         A+Pk+ilelm+v+gL +e+v SHL k+R
  Neem_22147_f_1 109 RPRVLWSVELHQQFVSA---------AVPKRILELMNVPGLKRENVGSHLAKFR 153
                     59*************98.........9**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.11E-7147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.8E-11159No hitNo description
PROSITE profilePS5011015.215139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466892.51E-9106158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-14107159IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-9110153IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSADGRVSAV MKGIHHGACD YLVKPIREEE LKNIWQHVIQ KKWNGNEKAK HSGSFEDNDR  60
QSKIIDEVEY ASFANEGTEG VLKAQKNRIC AKEEDDGELE NEDPSTKRRP RVLWSVELHQ  120
QFVSAAVPKR ILELMNVPGL KRENVGSHLA KFRPYLKRLN GVQGGISNAF RALIETNMKL  180
GSLRKFDI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448148.12e-93two-component response regulator ORR21 isoform X2
RefseqXP_006469260.12e-93two-component response regulator ORR21 isoform X2
SwissprotA2XE312e-61ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S72e-61ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A067F3V52e-92A0A067F3V5_CITSI; Two-component response regulator
TrEMBLA0A067F3W02e-92A0A067F3W0_CITSI; Two-component response regulator
STRINGXP_006448147.18e-93(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.14e-48response regulator 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]