PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_21583_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 180aa    MW: 20346.8 Da    PI: 6.6291
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_21583_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-055880123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC+ C+k+F++   L  H  +H
  Neem_21583_f_1 58 YKCETCKKVFKSYQALGGHRASH 80
                    9************9999999888 PP

2zf-C2H213.50.00022104126123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++Fs+   L  H rtH
  Neem_21583_f_1 104 HECPVCFRVFSSGQALGGHKRTH 126
                     79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-115882IPR007087Zinc finger, C2H2
SMARTSM003550.0235880IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.33E-758126No hitNo description
PROSITE profilePS5015710.0345885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-4102126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11103126IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452104126IPR007087Zinc finger, C2H2
SMARTSM003550.15104126IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMLSRDKWKR KENQNELLLL QEEEEEAAAV AVATEKSMEE TDESEEFKSF KNRSRGKYKC  60
ETCKKVFKSY QALGGHRASH KKIKFYTPSH ETELEQENAD KKVHECPVCF RVFSSGQALG  120
GHKRTHVTGL VASSTSARSS TKLGENLIDL NLPAPIDDDD ISQIELSAVS DAEFVNHIKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9477122e-77KU947712.1 Toxicodendron vernicifluum microsatellite c24822 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445328.13e-91zinc finger protein ZAT9
RefseqXP_006490850.28e-91zinc finger protein ZAT9-like
SwissprotQ9SHD08e-37ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A2H5NP106e-90A0A2H5NP10_CITUN; Uncharacterized protein
TrEMBLV4TDZ77e-90V4TDZ7_9ROSI; Uncharacterized protein
STRINGXP_006490850.11e-90(Citrus sinensis)
STRINGXP_006445328.11e-90(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-37C2H2-like zinc finger protein