PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2138_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 287aa    MW: 31993.4 Da    PI: 8.3065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2138_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081223244323
                    ETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                    Cp Cg  Fs+  +L  H  + H
  Neem_2138_f_3 223 CPQCGAKFSSVTMLIEHVEKvH 244
                    *****************99888 PP

2zf-C2H215.93.7e-05259281223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp+C++ F+++  L+ H  + H
  Neem_2138_f_3 259 VCPKCSRGFRDPVALVEHVERdH 281
                    7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.88E-11459No hitNo description
PROSITE profilePS510397.8371059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.4E-101050IPR000058Zinc finger, AN1-type
SMARTSM001540.00431352IPR000058Zinc finger, AN1-type
PfamPF014284.3E-131351IPR000058Zinc finger, AN1-type
PROSITE patternPS0002806082IPR007087Zinc finger, C2H2
Gene3DG3DSA:4.10.1110.101.0E-1091150IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.41E-893144No hitNo description
PROSITE profilePS510397.94798146IPR000058Zinc finger, AN1-type
SMARTSM001540.047101142IPR000058Zinc finger, AN1-type
PfamPF014284.0E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003550.21221244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871221249IPR007087Zinc finger, C2H2
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
SMARTSM003556.7258281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663258286IPR007087Zinc finger, C2H2
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPQFPDLG KHCSLPDCKQ IDFLPFTCDC CHKVFCLEHR SYKQHQCPKS ERHDVTVVIC  60
PLCAKGVRLR PDDNPHITWE NHVNADCDPS NYDKVTKKRK CPVRGCREVL VFSNTIKCRD  120
CTVDHCLKHR FGPDHDCPGP KKLDTGFAFM NLLNRSRKED PKSKQSPTPS SPKWTTSILS  180
AASSFRASAE AGMSKLSSEI SQKWHIAKDG AGQSSSSEVT ELCPQCGAKF SSVTMLIEHV  240
EKVHDRSGNQ HHAKVTIDVC PKCSRGFRDP VALVEHVERD HGGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006489935.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-126SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A067EEW80.0A0A067EEW8_CITSI; Uncharacterized protein
TrEMBLA0A2H5P1F50.0A0A2H5P1F5_CITUN; Uncharacterized protein
TrEMBLV4S7610.0V4S761_9ROSI; Uncharacterized protein
STRINGXP_006489935.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-122C2H2 family protein