PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20801_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family M-type_MADS
Protein Properties Length: 136aa    MW: 16204.2 Da    PI: 10.8971
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20801_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25.2e-141153345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    i ++s r+ ++ kRr g+lKK +EL +LC++++ +ii+s+++k
  Neem_20801_f_1 11 IVSDSARKASLKKRRVGLLKKVSELTTLCGVNAFIIIYSPEDK 53
                    568999*********************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.264153IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-22295IPR002100Transcription factor, MADS-box
CDDcd002664.22E-24285No hitNo description
PRINTSPR004047.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTRKKVKLVW IVSDSARKAS LKKRRVGLLK KVSELTTLCG VNAFIIIYSP EDKEPAMWPS  60
RPVVQQLLAR FHSLPEMERC KKMMNQETYL KERVTKVQEQ LKKHHRKNKE TDVSIIMRQI  120
YHDKTLDDCN KRRRKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVWIVSDSARKASLKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430045.17e-64uncharacterized protein LOC18038065
SwissprotQ9FJK32e-30AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV4SW841e-62V4SW84_9ROSI; Uncharacterized protein
STRINGXP_006430045.13e-63(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-31AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]