PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20658_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 381aa    MW: 42935.8 Da    PI: 7.6462
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20658_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.43.8e-20339376238
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v
  Neem_20658_f_1 339 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQV 376
                     8***************************99*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-21323376IPR003657WRKY domain
SuperFamilySSF1182904.32E-18331376IPR003657WRKY domain
PROSITE profilePS5081120.312333376IPR003657WRKY domain
SMARTSM007741.0E-13338381IPR003657WRKY domain
PfamPF031062.4E-17339376IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAKGSGLSID SDPIAGNLFL HQPTVLNSFP ENHQNHNNVN FRNTRFKFSS IMDGKISPTT  60
TPSTIQFPVC LNSSSHDQDR PVHQLDDEHK RTVVIDEMDF FTGKNHDHIK SNADNSNADH  120
KKESDRPIVL QLKVNTGLNL LTTNASSDQS MVDDGISTNM EDKRGKNEYA VIQAELDRVS  180
AENQRLRDML NQVTSNYNML QMHMMTLTQH QQNQKSKISD EQVEEKKGIM APRQFIDLGL  240
ATNNTTDTDE PSLSSSEERS RNHAGSPVHR NNSNEENTVI FDQDKKEFVK RDDSPDKSYG  300
ANKVPKFSSS SQKNVDQTEA TMRKARVSVR ARSEAPMIND GCQWRKYGQK MAKGNPCPRA  360
YYRCTMAAGC PVRKQVCLLS L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061391e-40AP006139.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT02A16, TM0243, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447589.11e-157probable WRKY transcription factor 31
RefseqXP_006495237.11e-157probable WRKY transcription factor 31
TrEMBLA0A2H5PWP81e-158A0A2H5PWP8_CITUN; Uncharacterized protein
STRINGXP_006495237.11e-156(Citrus sinensis)
STRINGXP_006447589.11e-156(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.17e-69WRKY DNA-binding protein 31