PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2064_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 301aa    MW: 33060.4 Da    PI: 6.5098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2064_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.82e-32159216259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Neem_2064_f_1 159 EDGYRWRKYGQKAVKNSPYPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 216
                    8******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33143217IPR003657WRKY domain
SuperFamilySSF1182904.71E-28150216IPR003657WRKY domain
PROSITE profilePS5081129.941153218IPR003657WRKY domain
SMARTSM007741.4E-37158217IPR003657WRKY domain
PfamPF031062.9E-25159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEGNREKSDP GAEFTSVSSC WTLGEPPDGD SVNYLFSSDR ESCILSEFGW NLHPENSSYL  60
GADERSDLAE NVVSCGMPEN TSSSSGALRG GSVNPVGSGD VSTSNPSVSS SSSEDPTEKS  120
TGSGGKPPEI PNKARKKGQK RIRQPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPYPRS  180
YYRCTNSKCT VKKRVERSSE DPTIVITTYE GQHCHHTVGF PRGGLIHHEA AFAGRLTHGI  240
PPYYYPAFQV PQETHSITQS HQEFPVEPRE SQPRVLPDPT PPLPTDEGLL GDIVPSGMLN  300
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25148215774Probable WRKY transcription factor 4
2lex_A1e-25148215774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384806e-47KM438480.1 Gossypium aridum WRKY117 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735300.11e-126probable WRKY transcription factor 57
RefseqXP_022735301.11e-126probable WRKY transcription factor 57
SwissprotQ9C9832e-75WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A2H5N9L81e-121A0A2H5N9L8_CITUN; Uncharacterized protein
TrEMBLV4TK801e-121V4TK80_9ROSI; Uncharacterized protein
STRINGXP_006483053.11e-122(Citrus sinensis)
STRINGXP_006438805.11e-122(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-66WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]