PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1981_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 183aa    MW: 20797 Da    PI: 5.6815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1981_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000143456123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H++ H
  Neem_1981_f_1 34 YECTFCKRGFTNAQALGGHMNIH 56
                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-52960IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.13E-73060No hitNo description
PROSITE profilePS5015711.4683461IPR007087Zinc finger, C2H2
SMARTSM003550.00973456IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MESPGKQRSS DSSSEENDRL EQVKEDAATT KRSYECTFCK RGFTNAQALG GHMNIHRKDR  60
AKAKQTISSS FSNKSIAMNE DSMNPRYIAP VSSEPTKYYP AFEARRDYLM YCPPSASSPR  120
HPHAYNDIEF FPRSQSLSMN EELLGANLSL GISPTYEEDN EVRKGIMEEE ELDLELRLGH  180
TTR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035036.19e-82PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A061ENL32e-80A0A061ENL3_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY059624e-81(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-15C2H2 family protein