PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19547_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 247aa    MW: 27862.4 Da    PI: 7.078
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19547_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014130152123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  C++ F++  +L  H+r+H
  Neem_19547_f_1 130 HMCYVCHQNFRSLKSLYGHMRKH 152
                     68********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.62179106IPR007087Zinc finger, C2H2
PfamPF139121.0E-78099IPR007087Zinc finger, C2H2
SuperFamilySSF576675.95E-580152No hitNo description
PfamPF139123.7E-4130154IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAQAQEQTHF PSLAADKVAA AAFQAASEDL IKEENQPVFE ADDLVDSDTH ASLSLKLKIP  60
RPDVIVEDLQ RHPLSDVLRT CDECGKQFIS GKALGGHKRA CLQKKNIQKQ KVKNVVSVKL  120
DGDQTSAGLH MCYVCHQNFR SLKSLYGHMR KHPDREWRGI QPPPQHENLC ISSTVSDYDD  180
QDHGEDVYHR DDEDRGVDYC SDNSAVDLVD TLKGWSVKAK RGLKIAQSRR RSEDLIRFRR  240
LVLVMGC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452771.11e-39transcriptional regulator ATRX homolog
TrEMBLV4UTT63e-38V4UTT6_9ROSI; Uncharacterized protein
STRINGXP_006452771.16e-39(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-18C2H2 family protein