PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_18973_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 219aa    MW: 24617.9 Da    PI: 8.353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_18973_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000193555323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C +C+++F +  +L +Hi tH
  Neem_18973_f_1 35 CRICDQVFLSTQDLINHIETH 55
                    *******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAGFGWNIRP DINMNDLNNH ERKRPFAATQ WQIGCRICDQ VFLSTQDLIN HIETHMVGDE  60
TAAAASRRQQ RDQHSFASPN TLSQNNFPPQ PLLQPPIPNG FMSQPLSERR NPVAFHNPNL  120
RGVTWDKLPC LPLQPISSSG IGLQGLCPRR PVHFPGSGGQ LLVPQRPVLE ARTSSNDFTR  180
PLIDQLQKAL PDVVKSVEKQ DYDRVYNAEM QGLDLTLKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2570923