PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1891_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-X1
Protein Properties Length: 1106aa    MW: 120123 Da    PI: 8.1883
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1891_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1186.5e-06419436118
       zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                    CG+H+C+++CH+GpC++C
  Neem_1891_f_2 419 CGHHSCGEICHPGPCGEC 436
                    ****************** PP

2zf-NF-X118.54.2e-06477494118
       zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                    CG H C++ CH G+CppC
  Neem_1891_f_2 477 CGLHHCNEFCHAGDCPPC 494
                    ****************** PP

3zf-NF-X120.31.2e-06572590119
       zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                    CG+H+C++lCH G CppC 
  Neem_1891_f_2 572 CGQHTCESLCHSGHCPPCL 590
                    ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.18E-7178247No hitNo description
PROSITE profilePS500168.769185246IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590188243IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.45188244IPR001841Zinc finger, RING-type
CDDcd060083.99E-5277338No hitNo description
SMARTSM004380.016300318IPR000967Zinc finger, NF-X1-type
PfamPF014220.61302317IPR000967Zinc finger, NF-X1-type
CDDcd060085.23E-11345393No hitNo description
PfamPF014220.013346372IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0067355374IPR000967Zinc finger, NF-X1-type
CDDcd060088.66E-10409452No hitNo description
PfamPF014220.068419436IPR000967Zinc finger, NF-X1-type
SMARTSM004380.008419438IPR000967Zinc finger, NF-X1-type
CDDcd060083.02E-14467515No hitNo description
PfamPF014221.6E-4477494IPR000967Zinc finger, NF-X1-type
SMARTSM004384.3E-4477496IPR000967Zinc finger, NF-X1-type
CDDcd060081.69E-4524583No hitNo description
PfamPF0142218534545IPR000967Zinc finger, NF-X1-type
CDDcd060081.43E-9562614No hitNo description
PfamPF014221.8E-5572589IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3E-4572591IPR000967Zinc finger, NF-X1-type
CDDcd060081.43E-5619667No hitNo description
PfamPF014222.6629646IPR000967Zinc finger, NF-X1-type
SMARTSM004380.026629647IPR000967Zinc finger, NF-X1-type
PfamPF014220.069682701IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2682702IPR000967Zinc finger, NF-X1-type
CDDcd060081.17E-5710759No hitNo description
PfamPF014221.9714740IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092721742IPR000967Zinc finger, NF-X1-type
PfamPF014242.6E-4853918IPR001374R3H domain
Gene3DG3DSA:3.30.70.3304.5E-49601009IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MSSEVRNDRR DRNRFPGRST RREWVPRGFS AAVVNVPQSF NQNADAAQSF NQNADAAQSF  60
NQNADAAQSF NQNAVAAQSF NQNAVAAQSF NQNTNAPQSF NQNANGDSEN TRDVSVSHDN  120
RRRGNQDFRG QKGQFANNEF RGQKGQFTNH HRGRGRGENQ AKKEPKDPNL PQLVQEIQDK  180
LMKGTVECMI CYDMVRRSAP IWSCSSCYSI FHLNCIKKWA RAPTSVDLSA EKNQGFNWRC  240
PGCQYVQLTS SKEIRYVCFC GKRTDPPSDL YLTPHSCGEP CGKPLESKVS SAGGSDEDLC  300
PHTCVLQCHP GPCPPCKAFA PPCLCPCGKK MITTRCSDRK SVLTCGQKCD KHLECLRHKC  360
EQICHVGPCG PCQVLVNASC FCKKKVEVVL CGDMAVKGEV KAEDGVFSCS STCGKKLRCG  420
HHSCGEICHP GPCGECELMP SKIKSCFCGK TSLQDQRKSC LDPIPTCSKV CGKPLACGLH  480
HCNEFCHAGD CPPCLVQVTQ KCRCGSTSRT VECYRTTGNE NFTCEKACGR KKNCGRHRCS  540
ERCCPFSSSN NLHSGDWDPH FCQMACGKKL RCGQHTCESL CHSGHCPPCL ETIFTDLTCA  600
CGRTSIPPPL PCGTPTPSCQ LPCSIPQPCG HSASHSCHFG DCPPCSVPIA KECIGGHVVL  660
RNIPCGSKDI RCNKLCGKTR QCGMHACGRT CHPPPCDAAC SSEPGLKASC GQICGAPRRD  720
CRHTCTALCH PSGLCPDVRC EFPVTITCSC GRSTASVPCD AGGSSAGFNS DTVFEASIVQ  780
KLPVPLQPVE LTGKKIPLGQ RKLMCDDECA KLERKRVLAD AFDITPPNLD SLHFGENAAV  840
SELLADLYRR DPKWVLSVEE RCKFLVLGKN RGNANSLKVH VFCPMLKDKR DAVRIIAERW  900
KLAVSAAGWE PKRFVVVHVT SKSKAPPRVI GVKGASAVNA SHPPVFDPLV DMDPRLVVSF  960
LDLPREADIS ALVLRFGGEC ELVWLNDKNA LAVFSDPARA ATATRRLDHG SVYYGAVLVV  1020
QNSGASGAPS SGNAWGGQGM VKEVGGVASQ RGNPWKKAVV QEMSWREDSW GDEEPSGGSA  1080
DLQASAWKEK RTSYCSNNKS VECPGP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440984.10.0hypothetical protein CICLE_v10018607mg
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLV4VN000.0V4VN00_9R
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1