PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_187_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 229aa    MW: 24741.3 Da    PI: 8.4914
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_187_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.21.9e-3141081100
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P++G+vg+++++++ql+q+++
  Neem_187_f_1   4 SCNGCRVLRKGCSDDCSIRPCLqwirnPQSQANATLFLAKFYGRAGLVNLINAGPENLRPAIFKSLLYEACGRIVNPIHGSVGLMWSGSWQLCQAAV 100
                   6************************************************************************************************ PP

        DUF260  93 elallkee 100
                   e++l +e+
  Neem_187_f_1 101 EAVLKGEP 108
                   *9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8423109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRVSCNGCRV LRKGCSDDCS IRPCLQWIRN PQSQANATLF LAKFYGRAGL VNLINAGPEN  60
LRPAIFKSLL YEACGRIVNP IHGSVGLMWS GSWQLCQAAV EAVLKGEPIT PLSSESSLKA  120
GDIRHVSKDE SAAAVGDRLH KVKSRSRFKR SAPKPKLKAE PVLVEAKFES LLDKLGGSTS  180
RTRELSQPDS EEADSLSVET VEASLAKPDA ADGSEVELEL TLGLGKWVP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485788.11e-116PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-77LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A067F1R71e-116A0A067F1R7_CITSI; Uncharacterized protein
STRINGVIT_17s0000g03720.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-79LOB domain-containing protein 41