PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_18349_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 246aa    MW: 27727.4 Da    PI: 7.7302
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_18349_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.52.5e-121943226
         G2-like  2 prlrWtpeLHerFveaveqLGGsek 26
                    prlrWtpeLH++Fv+a+e+LGG+ek
  Neem_18349_f_1 19 PRLRWTPELHHCFVHAIERLGGHEK 43
                    8**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-111545IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGSCGRSGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG HEKKNSTHQR RQAFDDCVDE  60
VNDDHMGFHQ YSRSEAIKES DSSQCIYSTT SLVPSKRART ETRSSISDQN LQCSQGICET  120
APSNPYHFDD YLQQNKGNVN EHNKRIKECY GLVEKQEDQK GSKEVRQKHD HKWGGEEGNN  180
FELSLSLSLP QPSSQRSNGC SSTSEMGGEA ISSYPNSNNS FKDCFRSSGR GRYNVNLDLS  240
IALCGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470870.12e-78two-component response regulator ARR12
TrEMBLA0A067ERQ02e-75A0A067ERQ0_CITSI; Uncharacterized protein
STRINGXP_006470870.18e-78(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.17e-15G2-like family protein