PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1822_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 441aa    MW: 48196 Da    PI: 6.8611
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1822_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.3e-063483861154
                    HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Neem_1822_f_3 348 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 386
                    5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10347394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-7347391No hitNo description
SMARTSM003530.0014348392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-10351396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MADESNTTTN WWESSRNRFD SGSSSSSSAL NNSLGSFGWP TEMVDIKAAR SSIDSSASVS  60
GSSVVFQDSQ KLQQGPDSAG SDLHMMGLGL SSPSLDWYQA LVPGDKSGRS FRSMLQDSNA  120
NYQQETGMGS SQVQWPREKV FPGISGDSTV TEFKQMSRGF SLDQPQFSPH GSSTDSTVKC  180
QGLPSSFQMD STALYGNPST IFQGILGSEN QPHQSAASFE NRSVNYHYGA STYGMNTSEV  240
LPSWSGNKVP QFSRTSSPKQ QPQHTHLHFS NNAPFWNASA ASMNDVRASG FFPTLQTPYQ  300
TQAFDEKPKQ IISEVRESST AVKKSCGSEP ASKRARNETP SPLPAFKVRK EKMGDRITAL  360
QQLVSPFGKT DTASVLSEAI EYIKFLHEQV HNNSDKSKDN EGPKQDLRSR GLCLVPVSST  420
FPVTHETTVD FWTPTFGGTF R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021136.10.0Basic helix-loop-helix DNA-binding superfamily protein
SwissprotQ8GXT31e-76BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A061F6M70.0A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGPOPTR_0011s13320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-74bHLH family protein