PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17203_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 250aa    MW: 27643.3 Da    PI: 9.6664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17203_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008627223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++C+++F +   +  H+r+H
  Neem_17203_f_1  6 VCKICNRRFANGKAMGGHMRSH 27
                    6*******************99 PP

2zf-C2H212.40.00047193215123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+k+F +   L  H + H
  Neem_17203_f_1 193 FECPFCDKVFDSGQALGGHKKIH 215
                     89*********999999999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.889532IPR007087Zinc finger, C2H2
SMARTSM003550.16527IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-8629IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-8627No hitNo description
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139121.6E-7152169IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-8188215No hitNo description
PROSITE profilePS5015711.011193220IPR007087Zinc finger, C2H2
PfamPF139123.4E-9193215IPR007087Zinc finger, C2H2
SMARTSM003550.016193215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDNKRVCKIC NRRFANGKAM GGHMRSHLAK LPISPKSNDP SPIPSTKPTS SSSSLSNMQS  60
YRSINREFLD LVSDDGESEA ESLKNPTKRR SKRRRRTIAS VVAAAAAPRP TEPESVSSVT  120
ENIFTDEELA MFLVMLAREK WPENEPVKEK EKRFPSYQAL GGHKASHKKM KIQQEGSSNS  180
AGTDVIVLEQ RIFECPFCDK VFDSGQALGG HKKIHFSYLP ATKTSPNSGK TLIDLNLPAP  240
PEDDSEVSQV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018840099.13e-65PREDICTED: zinc finger protein ZAT4-like
TrEMBLV4RL224e-68V4RL22_9ROSI; Uncharacterized protein
STRINGXP_006421633.17e-69(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-30C2H2-like zinc finger protein