PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1707_f_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 587aa    MW: 66973.9 Da    PI: 7.9841
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1707_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.2e-18359449288
                    EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                    +k+l++sdv+++gr+vlpk+ aee+  +++ +e+++++++d  s ++W++k++y  ++ks++yv++ ++ +Fvk+n+L+ gD+++++ d+++
  Neem_1707_f_5 359 KKELKNSDVGSLGRIVLPKREAEENlpSLSDKEGIQVVIKDvYSDQVWTLKFKYwsNNKSRMYVFE-NTGDFVKQNRLEIGDSLTLYEDENK 449
                    6899***********************66667899******7888*******99878888889999.*******************944433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-24354450IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-21357449No hitNo description
PROSITE profilePS5086310.236358461IPR003340B3 DNA binding domain
SMARTSM010193.7E-20358461IPR003340B3 DNA binding domain
SuperFamilySSF1019361.7E-19358450IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-14360449IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MKAVTHHSTE NTEITCSDEI LCVGNNSKKL RITTEQVTFD HGGTAKLANN KPATSPEWHW  60
QQQPHGPKAK VSSCRVSAAL FLYNFMAFSL SFFHSTPALL HHSTRFSCFF DTWAFSTGSI  120
FRYQGLFLEP DVHSLLQIIQ LKLIHTHSSS LSNSVHFNNM EKYNFSLASS SKATSCNNTN  180
TTSTNLRQPN MVYTQNSQFS NYETMSNSST LPQHFFPAQY FLPYHHQTMQ FASTYPIQQQ  240
TGYPFAPYPV YPFWLAQSAI DNRAGTAVQE GSWFVQPDEV VKEQQRGALD PHKTKIARIK  300
RKLARQKSLS LQRNASSGAS SSVPSSAHLE TRRLTMYGAD RDLYKFCTPD NKRLRVLLKK  360
ELKNSDVGSL GRIVLPKREA EENLPSLSDK EGIQVVIKDV YSDQVWTLKF KYWSNNKSRM  420
YVFENTGDFV KQNRLEIGDS LTLYEDENKN LGQYFSINKV ERPAAEPSYT QHHSSHNYIH  480
TPAMRQARDE EEANLALLIE QLKHKEQQEA YYNLMTLPME DFSRQSGQPN EEGSSNNITN  540
PGIHRPHMAA PSLTVSKMKN DDDHHSVDDW YGALDMLPDV NTYNFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-483484583111B3 domain-containing transcription factor LEC2
6j9c_D2e-483484583111B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046749.11e-150B3 domain-containing transcription factor LEC2
TrEMBLA0A2H5N2T81e-150A0A2H5N2T8_CITUN; Uncharacterized protein
STRINGXP_006449368.11e-144(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.13e-51B3 family protein