PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1673_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 396aa    MW: 43272.5 Da    PI: 5.611
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1673_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.81.1e-23215269259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr    C+s+ gC ++k+vers++dp+++++ Y+g+H+h+
  Neem_1673_f_2 215 ADLWAWRKYGQKPIKGSPYPR----CSSSkGCAARKQVERSNTDPNIFIVSYTGDHTHP 269
                    699***************996....99888****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-24202271IPR003657WRKY domain
PROSITE profilePS5081126.968209271IPR003657WRKY domain
SuperFamilySSF1182903.4E-20209271IPR003657WRKY domain
SMARTSM007742.6E-30214270IPR003657WRKY domain
PfamPF031061.2E-18216269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGERLPAATA AENWDLQAVV RCYSSAAHNA ATTTANDAQE INTTTDGNNS CAENPLSFLT  60
TLKFEEEDDP FSFPNLLPTK NDGLEELQDS YKPFFRTPSS SCSVPQQLID DVLQQQLTHT  120
STSATFPVSP TSSSPFVFGE NQIQQPRHVQ QQSYHVLQDL QRQPQILQQH QQQQPPVIGS  180
ALPLRPVPSQ ASRSRKRKTP QKRMVCHVTA ENLSADLWAW RKYGQKPIKG SPYPRCSSSK  240
GCAARKQVER SNTDPNIFIV SYTGDHTHPR PTHRNSLAGS TRNKLSRTQN PVGKDSTPPT  300
LANASCSSPL STTCQSPTAP PPAPADEEKN TMENSHREGA DKEREEGDSQ GFAEEEDDYF  360
DDLLIPNLAA AIDEDFFKGL KDFSSSSASG GGGGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-152152721780Disease resistance protein RRS1
5w3x_D2e-152152721780Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198SRKRKT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422058.11e-114probable WRKY transcription factor 27
SwissprotQ9FLX82e-54WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A2H5NZT61e-117A0A2H5NZT6_CITUN; Uncharacterized protein
STRINGXP_006422058.11e-113(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-54WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]