PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16670_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 570aa    MW: 63168.7 Da    PI: 8.6368
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16670_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.94e-23135236199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  Neem_16670_f_1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 225
                     99*****************************954.5444.48************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  Neem_16670_f_1 226 KQQLLLGIRRA 236
                     8889****997 PP

2Auxin_resp1218.8e-40261344183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+ dldpvrW+nS+Wr+L+
  Neem_16670_f_1 261 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVYnNQISLGMRFRMMFETEESGTRRYMGTITGIGDLDPVRWKNSQWRNLQ 344
                     79********************************98799*******************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-43124264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-41126250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-18134226No hitNo description
PROSITE profilePS5086311.871135237IPR003340B3 DNA binding domain
SMARTSM010197.1E-23135237IPR003340B3 DNA binding domain
PfamPF023624.7E-21135236IPR003340B3 DNA binding domain
PfamPF065071.2E-35261344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MKTPANSAGA SAVMAASNPG EGGEKKTINS ELWHACAGPL VNLPAAGTHV VYFPQGHSEQ  60
VAASMKKDID GQVPNYPNLP SKLFCLLLNV TLHADPETDE VYAQMTLQPV TSFEKEDLLR  120
SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELMARDL  180
HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
ANLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVVPLAK YYKAVYNNQI  300
SLGMRFRMMF ETEESGTRRY MGTITGIGDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPPPFFR PKHPRQADDD SFDLDNVFKR TMPWIGDDFG IKDSQALPGL  420
SLVQWMNMQQ NSSLANSMQS GYMHSMSGSV LQNLNGADLS RQLGLPPQMP QPNNLQFTGQ  480
RLPQQVQQID QLQKLPSTMN QLGSIIPPQQ SLGDITQQSR QNMITQTLPS EASATKTIIF  540
GTTVCHATAC SSYSTPRSAK TAFRCVSGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1742236545388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9393052e-44KF939305.1 Dimocarpus longan auxin response factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2N9GCT50.0A0A2N9GCT5_FAGSY; Auxin response factor
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGXP_006474325.10.0(Citrus sinensis)
STRINGXP_006453190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19