PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16576_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 142aa    MW: 15599.3 Da    PI: 9.7777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16576_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000542648123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  Neem_16576_f_1 26 FVCKTCNREFSSFQALGGHRASH 48
                    89**********99999998887 PP

2zf-C2H210.60.00187294123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ Cg  F     L  H+r+H
  Neem_16576_f_1 72 HECSVCGLEFAVGQALGGHMRKH 94
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-72494No hitNo description
PfamPF139126.7E-122550IPR007087Zinc finger, C2H2
SMARTSM003550.242648IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7432653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SMARTSM003550.257294IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-97296IPR007087Zinc finger, C2H2
PROSITE profilePS501578.9547294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAAVNVPECL MLLSKVGESD QSKRVFVCKT CNREFSSFQA LGGHRASHKK LKLISGYFCD  60
RPVSQQKPKT QHECSVCGLE FAVGQALGGH MRKHRPAVGG SEGLMTRSLL PVQVLKKCNS  120
KRVLCLDLNL MPSGDDLKLW VA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424755.12e-56hypothetical protein CICLE_v10029464mg
RefseqXP_006488262.12e-56PREDICTED: zinc finger protein ZAT12
SwissprotQ9LX852e-38ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A067GBS02e-63A0A067GBS0_CITSI; Uncharacterized protein
STRINGPOPTR_0008s05110.13e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-40C2H2 family protein