PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16277_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 310aa    MW: 34131.1 Da    PI: 6.7795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16277_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019214236123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  Neem_16277_f_1 214 HECSICGAEFSSGQALGGHMRRH 236
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-8137160No hitNo description
PfamPF139124.1E-11137162IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138138165IPR007087Zinc finger, C2H2
SMARTSM003550.3138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
SuperFamilySSF576672.55E-8209236No hitNo description
Gene3DG3DSA:3.30.160.608.9E-4212236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.2E-13213237IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785214241IPR007087Zinc finger, C2H2
SMARTSM003550.01214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTTEEAHNLT MEEAQEEVMG CKDYMQIMKG KRTKRQRLQS PLPLAVLPVS SCSSLAESGG  60
DHGERFSDNN SVVIGGFDRP TTSVEEFTTS SEDEEDMANC LILLAQGKSS AACQYQPSAA  120
NHSTATSTKP VGEGLYVYEC KTCSRCFPSF QALGGHRASH KKPKMNTNEE RKGIMLMEEE  180
DDHFGNMSTA LSLQIANRVA NLSANNNSKA NKVHECSICG AEFSSGQALG GHMRRHRNFM  240
STTTTRGLST INNDHSPEAK KRQRNILQLD LNLPAPEVDH ERRGGESKFG FASKEQVIVF  300
SRSSLVDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428462.21e-112zinc finger protein ZAT5
RefseqXP_006493540.11e-112zinc finger protein ZAT5-like
TrEMBLV4SM301e-109V4SM30_9ROSI; Uncharacterized protein
STRINGXP_006493540.11e-112(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.15e-54C2H2 family protein