PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1620_f_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HB-other
Protein Properties Length: 386aa    MW: 41766.1 Da    PI: 7.8789
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1620_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.54e-071374655
                   S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
       Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                   +ft+ +++e+e   ++  n  ps+e    LA+k            ++ +qV +WFqNrR+  
  Neem_1620_f_6 13 RFTPAEVTEMEGILQEhhNAMPSREILVALAEKFsesperkgkiIVQMKQVWNWFQNRRYAI 74
                   699999999999999766889*********************9999*************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-12475IPR009057Homeodomain-like
SMARTSM003892.3E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-91280IPR009057Homeodomain-like
PROSITE profilePS500719.7341377IPR001356Homeobox domain
CDDcd000864.42E-61375No hitNo description
PfamPF000461.1E-41374IPR001356Homeobox domain
PfamPF167191.7E-41147273IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTPAEVT EMEGILQEHH NAMPSREILV ALAEKFSESP ERKGKIIVQM  60
KQVWNWFQNR RYAIRAKSIK SPGKLNVTPM ARDDSAPVRN IPQPVAAPIP ASMPASMPAS  120
IPASMPSSVP PPSVSSAGRA TSESTFMEFE AKSARDGAWY DVATFLAHRN LETSDPEVQV  180
RFAGFGPEED EWVNIKKHLR QRSLPCEASE CVAVLPGDLI LCFQEGKDQA LYFDAHVLDA  240
QRRRHDVRGC RCRFLVRYDH DQSEEIVPLR KVCRRPETDY RLQQLHAVND SAPADQQKTS  300
TDLSAATAPR VISSSSEMVQ KQGSGIVAPA APVSHSIVSV PIQTTTAEAK NTTGSSAISV  360
SNPVPPSGAA ILSGTAATSA TTGSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-481472774134SHH1 SAWADEE
4iur_B5e-481472774134SHH1 SAWADEE
4iut_A5e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-481472774134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447241e-33AC144724.9 Medicago truncatula chromosome 8 clone mth2-7g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451761.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_006464825.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-159SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A067F5M30.0A0A067F5M3_CITSI; Uncharacterized protein
TrEMBLV4UR890.0V4UR89_9ROSI; Uncharacterized protein
STRINGXP_006464825.10.0(Citrus sinensis)
STRINGXP_006451761.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-137sequence-specific DNA binding transcription factors;sequence-specific DNA binding