PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16107_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 374aa    MW: 41671.1 Da    PI: 9.5363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16107_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05106128123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C+ C+k F r  nL+ H r H
  Neem_16107_f_1 106 YICEVCHKGFQRDQNLQLHRRGH 128
                     89*******************88 PP

2zf-C2H213.50.00021182204123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H + +
  Neem_16107_f_1 182 WKCDKCSKRYAVQSDWKAHTKIC 204
                     58*****************9987 PP

3zf-C2H211.40.00097212230523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg+ Fsrk+++++H   +
  Neem_16107_f_1 212 DCGTIFSRKDSFVTHRAFC 230
                     8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5105128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.14E-6105128No hitNo description
SMARTSM003550.038106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741106128IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-4170203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.14E-6177202No hitNo description
SMARTSM00355130182202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSNFVQDFEE DEQFHSTIVS QSSNGSPSHA ENGGDHGSTP PTTASKKKRN KPMSFFVHQP  60
RFSIMNKFHN FVPKFPTYSI CRILSTDPDA EVVALSPRTL MATNRYICEV CHKGFQRDQN  120
LQLHRRGHNL PWKLKQRPST QIKKRVYVCP EPSCVHHHPS RALGDLTGIK KHFCRKHGEK  180
KWKCDKCSKR YAVQSDWKAH TKICGTREYR CDCGTIFSRK DSFVTHRAFC DALTEENYKA  240
NQNLAAAGGP LQNHTQELFT SSMPSSDSGT NAYTMMNLSI STDNMENSMR PLSLSSAGVT  300
LSSNLDPVLN SRIPQTCLSG SNAYATAIGS LYTSATALLQ KAAEMGAKIS DNTITPILLK  360
GFTGFSRGFN NGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33178236361Zinc finger protein JACKDAW
5b3h_F1e-33178236361Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021285786.10.0protein indeterminate-domain 2-like
TrEMBLA0A2C9VHA60.0A0A2C9VHA6_MANES; Uncharacterized protein
STRINGcassava4.1_024252m1e-176(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1801789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-102C2H2 family protein