PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_15749_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GeBP
Protein Properties Length: 387aa    MW: 43190.2 Da    PI: 5.0292
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_15749_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573129.41.5e-40157254298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                     lfqrlwseeDeiv+L+G+i++ +k+g +p +d++afy+++kks++++vs+ qlv+KirrLK+K++++ +k  k+g++++fsk+h+qk+++lskk+
  Neem_15749_f_1 157 LFQRLWSEEDEIVVLKGMIEYSTKKGIDPNQDMNAFYDYIKKSLHVDVSRAQLVDKIRRLKRKYENNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 251
                     79********************************************************************99*********************** PP

          DUF573  96 Wgs 98 
                     Wg+
  Neem_15749_f_1 252 WGT 254
                     *95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-35158253IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAPKKANPIE EPPAASLSEG EEEETSSEEE TSSEDEAEED TQEPSQPSSP PRQQTQKQTA  60
VKKPEITTVT SQSKSSSSEV SGSESESESE PDATPKPIAS KPMEETPKAT KSRSKPAAKR  120
PNETEETPKD SKRLKKKGGD ADLDEEKKPG EDTKKQLFQR LWSEEDEIVV LKGMIEYSTK  180
KGIDPNQDMN AFYDYIKKSL HVDVSRAQLV DKIRRLKRKY ENNLEKGLKK GEDQTFSKPH  240
EQKAYDLSKK LWGTESISGV IESAAKSNGK VRKNQNQKGN IKSLAFLKAE LIDGAKDVEK  300
MDVDNKEGDG VDKSVNMKEF HKNFGMAGLE EFVINDGLDM IGAVKKAELE EKWKKLQIAQ  360
LELFLQRNEL INDQAKLTLD ALKSSGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449140.10.0hypothetical protein CICLE_v10015528mg
TrEMBLV4UDY20.0V4UDY2_9R
STRINGPOPTR_0009s09150.16e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-33DNA-binding storekeeper protein-related transcriptional regulator