PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_15620_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 294aa    MW: 32671 Da    PI: 4.4317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_15620_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.3e-06175218755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ r RR++i ++ +eL +l+P         +++ ae+ + A +Y+k Lq
  Neem_15620_f_2 175 IAARERRRKITEKTQELGKLIPGgH------RMNTAEMFQAASKYVKFLQ 218
                     56799*****************955......9*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.56168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-10172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-9173225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-7174222No hitNo description
SMARTSM003534.0E-8174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MALSFCSNWE SLQHLNSEIQ SCGSDGVDGG GSSFQQPPQV PQLVEDCFTL NNINGFDIPE  60
TLINPILQPA EDLFYSNLLP YFSSPSDSLT SLSPEIFPLE DFDPYQLPKR QKSYPPPDNF  120
LYGYLPNPPL APEFFPEVVL APPADFPVPP PVTFSSGKTE NVKKQNGTSL SVQSIAARER  180
RRKITEKTQE LGKLIPGGHR MNTAEMFQAA SKYVKFLQAQ VKILQLMGLK QEGKEQADHG  240
EELQALLASP IIQEKLYSEE KCLISKEFAE SLANDPEIQS KPVIVEGIDQ LLRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468467.11e-105transcription factor bHLH52
TrEMBLA0A067GDB51e-104A0A067GDB5_CITSI; Uncharacterized protein
STRINGXP_006468467.11e-105(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-34bHLH family protein