PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14375_a_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 118aa    MW: 13032 Da    PI: 9.3551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14375_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-05426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C++sFs+   L  H++ H
  Neem_14375_a_1  4 HKCKLCTRSFSNGRALGGHMKAH 26
                    79******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-5329No hitNo description
PfamPF139121.5E-7328IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MERHKCKLCT RSFSNGRALG GHMKAHLAAL PLPPKTTQQQ LADTTTXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXSLAYGLR NNPKKSFRLA DPEFSFAVDS GSGSEAAAEF GNQEAKVE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440308.17e-35zinc finger protein ZAT1
TrEMBLA0A067FDZ71e-33A0A067FDZ7_CITSI; Uncharacterized protein
TrEMBLA0A2H5NTT72e-33A0A2H5NTT7_CITUN; Uncharacterized protein
TrEMBLV4T0882e-33V4T088_9ROSI; Uncharacterized protein
STRINGXP_006440308.13e-34(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.16e-15C2H2-like zinc finger protein