PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1400_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 328aa    MW: 36718.7 Da    PI: 5.8462
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1400_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.4e-10126181560
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                    kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +     l 
  Neem_1400_f_2 126 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 181
                    9*****************************************99887766666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-16122186IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795124187IPR004827Basic-leucine zipper domain
PfamPF001704.9E-9126183IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-10126181No hitNo description
SuperFamilySSF579598.44E-11126178No hitNo description
CDDcd147037.48E-24127176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MENRDPPNPN SNPPTRGPYH RRSQSEVQYR IPDDLDLVSD PLFDGIGGSE DDLFCSYMDI  60
EKIGSNPAGD DPKQENANVN AGARPRHRYS NSVDGSTSTS SILESIEAKK AMDPDKLAEL  120
WTVDPKRAKR ILANRQSAAR SKERKARYIS ELERKVQTLQ TEATTLSAQL TLFQRDTTDL  180
STENTELKLR LQAMEQQAQL RDALNEALKK EVERLKIATG EIMTPTDTYN FGMHHIPYNQ  240
SLFYPHQPQP GTGDPQNVQM QQFHSFQPNM SSAPHQPMLP TANSHAFSEM LQQDPLGRLQ  300
GLDINGRNTH LVKSEGPSIS ASESSSTF
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435914.10.0bZIP transcription factor 18
RefseqXP_006486172.10.0bZIP transcription factor 18
SwissprotO228731e-121BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A067DWF70.0A0A067DWF7_CITSI; Uncharacterized protein
STRINGXP_006486172.10.0(Citrus sinensis)
STRINGXP_006435914.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40422757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-113bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]