PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1397_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 238aa    MW: 27367.8 Da    PI: 9.5355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1397_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000385107223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C+ C+++++++ +L  H +  H
  Neem_1397_f_3  85 SCSVCSRVYPTSRLLSIHVSEaH 107
                    6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.484107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086107IPR007087Zinc finger, C2H2
SMARTSM003550.021122147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAMVLDRKLE SEFPYWASVR RRFRPDSPFF ASGNIERELL AKQAALDFTE DEKYQLENMV  60
TDDGSSRLSS LEEFEDHYSA RHTASCSVCS RVYPTSRLLS IHVSEAHDSF FQAKVARGYA  120
MYECLVEGCG LKFKNYKSRQ QHLLDKHKFP TSFEFFKKAH PSKKQRQKHQ RKQAVHNKEA  180
STTMEVEDET IDGLVSAVSK LSTSDSTPSS VSFGRHTRGL TFVPRAVVRE RRPDSTKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447049.11e-154zinc finger protein 511
RefseqXP_006470078.11e-154zinc finger protein 511
TrEMBLV4W2X61e-153V4W2X6_9ROSI; Uncharacterized protein
STRINGXP_006470078.11e-153(Citrus sinensis)
STRINGXP_006447049.11e-153(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-96zinc ion binding;nucleic acid binding;zinc ion binding