PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13954_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TCP
Protein Properties Length: 239aa    MW: 25513.6 Da    PI: 5.6254
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13954_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.47.8e-281952489
             TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.............................k 89
                    ++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++  ++s +ss+s+ s +                             +
  Neem_13954_f_1  1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFSsLNVSLRSSGSS-SLSlsssksaplsfhgalplysnnnggfgvafH 95
                    9**********************************************888755555555552.222223334455555565565555555544331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.241139IPR017887Transcription factor TCP subgroup
PfamPF036343.5E-261103IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSIIAAT GTGTIPANFS SLNVSLRSSG  60
SSSLSLSSSK SAPLSFHGAL PLYSNNNGGF GVAFHHNHHQ FYHQHQPNSG DHHHYFFRED  120
LFKESSDHQR NAPETASVAT VIAANAGPNA FWMLPAGGSG GAGSDPQMWS TFPAAQNYSL  180
GSLFANQQQI GGQQSNNIGV TAAYSNSNSG RAAELAMNLE QDHQENNQVS DSGEEDSQE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022719790.18e-63transcription factor TCP23-like
TrEMBLA0A061FIV62e-59A0A061FIV6_THECC; TCP family transcription factor, putative
STRINGEOY172454e-60(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-27TCP family protein