PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13924_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 391aa    MW: 43544.9 Da    PI: 9.4797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13924_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017332352223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ CgksF  ++ +++H++++
  Neem_13924_f_1 332 TCSQCGKSF-KPEKMHKHMKSC 352
                     6********.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061362.0E-3816173IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEGAAKGNFG GEVRRIHIIY FLSHMGHVEH PHLIRVHHLT RNGVYLRDVK RWLAEVRGKD  60
MPEAFSWSYK RRYKSGYVWQ DLMDDDLITP ISDNEYVLKG SENPSIYGKK NILISRDDQN  120
PIEVEDQHPE QPSLKEEIPR TPNTSPEIFE ESSLFGSDRS SLTDDSMKQL HEEDLLETIK  180
QNTNEKIEKP ENHSTPASFY SNLSFSSSSS SSKSQFAKSK SYSSNGASNM LRNLMKCGAV  240
DTNDAVIVTV NRADKTCLAK SVSISDPGAV ICRGEKLGGS ARVFGTPWNN NQHPQQNRAR  300
KIFDGVTGSK RKNEFGSTKP GSSAYKPVGG PTCSQCGKSF KPEKMHKHMK SCKGMRNLAK  360
TTAAVSAEKT PPQRSFSLSP EKSTSGYFLT G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464115.11e-123uncharacterized protein LOC7488155 isoform X1
RefseqXP_024464116.11e-123uncharacterized protein LOC7488155 isoform X1
TrEMBLA0A2N9J9K41e-123A0A2N9J9K4_FAGSY; Uncharacterized protein
STRINGGLYMA08G16910.21e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1058623