PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13691_f_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 468aa    MW: 51998.2 Da    PI: 8.3965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13691_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05143165123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  Neem_13691_f_6 143 FVCEICNKGFQRDQNLQLHRRGH 165
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.68E-7142165No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5142165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949143165IPR007087Zinc finger, C2H2
SMARTSM003550.017143165IPR015880Zinc finger, C2H2-like
PfamPF121717.4E-5143165IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SMARTSM00355220184214IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4207240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.68E-7214239No hitNo description
SMARTSM00355200219239IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MNQMHVNRTE EFLYYCRVLF ENDFHHCPPV ILLMLAEWQF CYWQFFTDGD CVSFSSSGNN  60
NIITGGEEVH QQEKRHQELL NQFLATNSLP SSTTTNTSSN GSTTTTIQQQ QPTKKKRNLP  120
GTPDPTAEVI ALSPNSLLST NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSTEIR  180
KRVYVCPEPS CVHHNPARAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV LSDWKAHSKT  240
CGTKEYKCDC GTIFSRRDSF ITHRAFCDAL AEENQRANPG LMANNIIPGS TGQSQKAAQM  300
GATASNGGSM IMAPPSFGAI LHPQNDQSSA SVVGHNSEGG FVNHFFNANG NVESSGMNDI  360
GMFYRFLDQN NSLVKNLEQQ ENSGNNKSAL HGTSSDSGIS SLSKFGGGDM MTVDFLGVGG  420
IRTRNGLHEK QNQQSQELKF GSGGMQSLNH FQQQAAAAAA MEKPMWEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33215285371Zinc finger protein JACKDAW
5b3h_F9e-33215285371Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433386.11e-130protein indeterminate-domain 2
RefseqXP_006472060.11e-130protein indeterminate-domain 2-like
TrEMBLV4TAN51e-129V4TAN5_9ROSI; Uncharacterized protein
STRINGXP_006472060.11e-130(Citrus sinensis)
STRINGXP_006433386.11e-130(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-98indeterminate(ID)-domain 2