PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1360_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 922aa    MW: 102917 Da    PI: 8.1033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1360_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00067798223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   kC +C++ F +  n++rHir+H
  Neem_1360_f_3 77 KCDKCSREFCSTINYRRHIRVH 98
                   7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.28476103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MPVTKLKSSN VTDVVKAEDG NDSLDTFIKQ AIGKEPLLSF SRNGDSSVQW IQLLQALDQQ  60
ELPGWPLLTP LKVQMQKCDK CSREFCSTIN YRRHIRVHHR LKKLDKDSTK NRDLLGAFWD  120
KLSVDEAKEV VSFKNAALED IVQARPSRYP ISSQELFGIL DDASEKTFLC GTAVSMQKYI  180
FDGEAGKIGL ETRNLVACTS FLVEQILIKA WLADKDAEAL RCQKLLVEEE EAAQRRQAEL  240
LERKRQKKLR QKELKAKEQR HEEKADDKES TDDMLESVPP PESSSPLDTS DSDGHNVDAV  300
SDHVPASFEP FLIANSEEDV DYEVQTGSCN ECTDLGYGQN VERRIIQGSG RRHMVVTRRQ  360
APSKSRGLPN GFHASQNSQA TKLGGMQKHG INRDTRAAPT VSGNKVWSRK PKPENDFGIV  420
KTTVLKEGID QPEQSKNHEV LIGSISVMLG NCNQQEGKSL VEAQDDGMVE HQMPKKNNVL  480
EKPKPDSIQS GANRPTVKFW RPVSRHGTKG PVSVRNGIRE SEAEFNAGQA GDQTLSNESC  540
LRSMDDNNCG LENTSLMEDT ICGGSMQFNS HAAKAFLSER WKEAIAAEHV KLVLTLECES  600
SGFQEVQSDC QVAVFQPSDF HKKNFCSNGE SRSVNIDSST MGAGKAPKFR LKPEKVKNYN  660
PTKQEKHYNT KMSGGVGATC NEVSLQREEE VTYKQQDDSS SFKKANKTAT RAPRKAAAFL  720
SLRQLNALAV ITVFAASGMV SAGDFVFVIF SVIYMYFLWK VSFPSLHSKE PYVFDPKNKI  780
LRLYVMVGAI IGLLLPIGYI LEGIVDGDRG AVKSAAPHVF LLASQVFMEG VAFSDGFSTP  840
IRVFVPVFYN ARRIFTLLDW LMSEFSKEES EYGISARRLY LGRALAVANT AFWCFNLFGF  900
LLPFYLPKAF KRYYSATGNK VK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241248ERKRQKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035417.10.0uncharacterized protein LOC18032948 isoform X1
RefseqXP_024035421.10.0uncharacterized protein LOC18032948 isoform X1
RefseqXP_024958299.10.0uncharacterized protein LOC102619453 isoform X2
RefseqXP_024958300.10.0uncharacterized protein LOC102619453 isoform X2
TrEMBLA0A498KLN60.0A0A498KLN6_MALDO; Uncharacterized protein
STRINGXP_006490422.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-124C2H2-like zinc finger protein