PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13423_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 151aa    MW: 16550.3 Da    PI: 10.0664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13423_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000593557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  Neem_13423_f_1 35 FVCKTCNREFSSFQALGGHRASH 57
                    89**********99999998887 PP

2zf-C2H211.20.001281103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F     L  H+r+H
  Neem_13423_f_1  81 HECSICGLEFAVGQALGGHMRKH 103
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-733103No hitNo description
PfamPF139123.5E-123459IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9933562IPR007087Zinc finger, C2H2
SMARTSM003550.243557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SMARTSM003550.2181103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.93381103IPR007087Zinc finger, C2H2
PfamPF139122.2E-981105IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MKRGREEGEM AAVNVPECLM LLSKVGESDQ SKRVFVCKTC NREFSSFQAL GGHRASHKKP  60
KLMGRDFLHR PVSPQKPKTQ HECSICGLEF AVGQALGGHM RKHRPAVGGN EGLVTRSLLP  120
AQVLKKCNSK GALCLDLNLM PSGDDLKLWV A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424755.16e-61zinc finger protein ZAT12
RefseqXP_006488262.16e-61zinc finger protein ZAT12
SwissprotQ9LX854e-36ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A067GBS03e-65A0A067GBS0_CITSI; Uncharacterized protein
STRINGXP_006488262.12e-60(Citrus sinensis)
STRINGXP_006424755.12e-60(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-41C2H2 family protein