PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13126_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 276aa    MW: 30715.4 Da    PI: 7.7077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13126_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05110129120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  Neem_13126_f_1 110 FSCTVCNKTFNRYNNMQMHM 129
                     89*****************9 PP

2zf-C2H213.40.00023195217123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  Neem_13126_f_1 195 FGCRKCGKAFAVRGDWRTHEKNC 217
                     56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-5106131No hitNo description
SMARTSM003550.079110132IPR015880Zinc finger, C2H2-like
PfamPF128749.6E-5110129No hitNo description
PROSITE profilePS5015710.367110137IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-6110129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SMARTSM00355230158190IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.28E-6180215No hitNo description
Gene3DG3DSA:3.30.160.607.3E-6181215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035597195215IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MQTPPSFAYM SSSESAGFEA DDQEDEDSII LSLGPPGQRI SKHPIYHPSS NQLGNNKNPT  60
TESGVTVALH IGPPTTEAGT SNNHNDIGNL VEGQYWIPSP AQILVGPTQF SCTVCNKTFN  120
RYNNMQMHMW GHGSQYRKGP ESLRGTKAAS SMLRLPCYCC AEGCKNNIKH PRSRPLKDFR  180
TLQTHYKRKH GAKPFGCRKC GKAFAVRGDW RTHEKNCGKL WFCICGSDFK HKRSLKDHVR  240
AFGDGHAPHT VELCEIGEED NDEEDENGGD MGPVFF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649629.11e-160zinc finger protein WIP6-like
SwissprotQ9FX681e-125ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2N9F1Q51e-157A0A2N9F1Q5_FAGSY; Uncharacterized protein
STRINGEOY021311e-154(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-127C2H2-like zinc finger protein