PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_12973_f_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 321aa    MW: 35894.7 Da    PI: 8.1287
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_12973_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.4e-33181238259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Neem_12973_f_5 181 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTIVITTYEGQHNHH 238
                     8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-34165240IPR003657WRKY domain
SuperFamilySSF1182907.59E-29173240IPR003657WRKY domain
PROSITE profilePS5081132.328175240IPR003657WRKY domain
SMARTSM007741.2E-37180239IPR003657WRKY domain
PfamPF031061.4E-25181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSNHEKKASY HYDPFDCNPQ GFNRLGFNFF QDNPSMYNPP TPSENLQAFD PTSYMSFTDC  60
LHGSMDYSSL SRAFDMSCSS SEVITPTMEE SSKKTATVAG ESTAMTTSEN NNPSTPNSSV  120
SSSSNEAGGN EDSGNNKKDK HQKGQEDGDE KSKKVNKPKK EKKQREPRFA FLTKSEIDHL  180
EDGYRWRKYG QKAVKNSPYP RSYYRCTSQK CTVKKRVERS YQDPTIVITT YEGQHNHHCP  240
ATLRGNAAGM LPPSLLASAS MGSSFPHELL SHLLPSTNNN LQGVPSSMYY QNLAPQQQLG  300
QVPDYGLLQD LVPSFIHKQK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-281732411078Probable WRKY transcription factor 4
2lex_A2e-281732411078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7089812e-33JF708981.1 Dimocarpus longan WRKY transcription factor 29-2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437166.11e-155probable WRKY transcription factor 28
RefseqXP_006484858.11e-155probable WRKY transcription factor 28
TrEMBLA0A2H5QUL41e-154A0A2H5QUL4_CITUN; Uncharacterized protein
TrEMBLV4TKS71e-154V4TKS7_9ROSI; Uncharacterized protein
STRINGXP_006484858.11e-154(Citrus sinensis)
STRINGXP_006437166.11e-154(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.15e-57WRKY DNA-binding protein 28