PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11956_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 168aa    MW: 18815 Da    PI: 5.3032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11956_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-053557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + Cp C+k F++   L  H++ H
  Neem_11956_f_2 35 FICPRCSKAFPTTQALGGHQNAH 57
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.37E-73162No hitNo description
Gene3DG3DSA:3.30.160.602.4E-43361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.9E-83559IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5723562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MYTINLLGGF ESADHHSSAT VENLRQFSIV DSNPFICPRC SKAFPTTQAL GGHQNAHRRE  60
RNEEQWTSWE ERRKKARELL IQKSKPPGDG RIIDFWAKDL AKTTDSSSGG PVPNEKFMGN  120
GEMGEFVGRD FLAMVAGDGG DGWLEDFPVD YRAHEITSTV ELDLTLKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1997845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.15e-10C2H2 family protein