PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11490_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 923aa    MW: 101722 Da    PI: 6.6563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11490_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-18315414198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  e++
  Neem_11490_f_1 315 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-PEGK 407
                     89**************************555566778***************9989999999***9.********************766.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  Neem_11490_f_1 408 LVMGFRK 414
                     7777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-31309420IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-19312415IPR015300DNA-binding pseudobarrel domain
CDDcd100176.67E-22313414No hitNo description
SMARTSM010191.0E-19315416IPR003340B3 DNA binding domain
PfamPF023627.9E-16315414IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293315416IPR003340B3 DNA binding domain
PROSITE profilePS5105013.624606656IPR011124Zinc finger, CW-type
PfamPF074967.4E-11611653IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MSSSSKICFN KECKELKSDR PRKGWLLRGG EFAELCDRCG CCESCSKRVH CGCIASVNTF  60
TLLDAGGIEC MTCARKNVIS APTPSWPPSL FYQTPLPERM KDFSVKNWTQ LAGSGPVPWR  120
QAATLFNSPM SHTELRPKVP YEVELTMDRI NATERLAASS LEKRKVEDFS ERLVNGGLKT  180
GSREIPENGN AGLNLDEQPS SYLNKSQQSS SFKDDSSSPH FGLAVSYASP NETNGQIGVS  240
GTPLRPPLQQ PLVKQFHGNL HNGVDSLGET QVRNGRPRVD PRGRGQLLPR YWPRFTDQDL  300
QQISADSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPPISQPEGL PLKVQDSKGK  360
EWIFQFRFWP NNNSRMYVLE GVTPCIQNMQ LQAGDIVTFS RLEPEGKLVM GFRKASTNQA  420
SDQDSEATKA GTGVSTNGDL RLPGFLSIDQ AELADPSSWS KVDKSGYIAT EAIGAKSSVS  480
RKRKNTTLGS KSKRLKIENE DLIELKLTWE EAQGLLRPPP NNVPSVVVIE GYEFEEYERR  540
TRYDALDVLV YLVSTINFDV NSPDELVVLW EAPILGKPTI FATDNMGDIF ELTILMKSFE  600
GESSPRNEKI QWIQCEDCSK WRKVPANALL PSKWTCSGNL WDPERSVCSA AQELQLEDLI  660
PPCNNSAPPK KMKAAKQEPD NVEALEGLDT LANLAILGEG EALPASSQAT TKHPRHRPGC  720
SCIVCIQPPS GKGPKHKQTC TCNVCLTVKR RFHTLMLRRE KKQSEKEAET SRKKQQQQKQ  780
PLPDKSADDE PLSCSKTGNN SPSEKKVVSE GSDDDSNRMK SSTSPFKGQI DLNIQPERED  840
ELSPGSDSGS IVRLIQDATD KYLSQQRLPS SVINSNTALS EGMQCGETGE KIGGGITLDG  900
SRQDADEDDH GTLPMKASIS ANG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-622934162125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481495KRKNTTLGSKSKRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920702e-40KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449227.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLV4U9070.0V4U907_9ROSI; Uncharacterized protein
STRINGXP_006449227.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-151high-level expression of sugar-inducible gene 2