PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11166_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GeBP
Protein Properties Length: 392aa    MW: 43564.4 Da    PI: 5.3748
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11166_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731314.7e-41156253298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                     lfqrlwseeDeiv+L+G+id+ +k+g++p +d++af++++kks++++vsk qlv+KirrLKkK++++ +k  k+g++++fsk+h+qk+++lskk+
  Neem_11166_f_1 156 LFQRLWSEEDEIVVLKGMIDYSTKKGVDPNQDMNAFHDYIKKSLHVDVSKAQLVDKIRRLKKKYQNNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 250
                     79********************************************************************99*********************** PP

          DUF573  96 Wgs 98 
                     Wgs
  Neem_11166_f_1 251 WGS 253
                     *95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.6E-36157252IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAPKKANPME EPPAASSSEE EGEETSEEVT SSEDEGEEDP QEQTEPSSPP RQQTQKQTAV  60
KKPEITPATS QSKSSSSEES GSETESDSEH DATPKPIASK PMEETPKATK SRSKPAAKRP  120
NQTEEDQKDS KRAKKKGVDA DPDEEKKPGE DTKKQLFQRL WSEEDEIVVL KGMIDYSTKK  180
GVDPNQDMNA FHDYIKKSLH VDVSKAQLVD KIRRLKKKYQ NNLEKGLKKG EDQTFSKPHE  240
QKAYDLSKKL WGSESTSGVI ESAAKSNGKV RKNQNQRGNN KLLASLKAEL TDGAKEGDNM  300
EVDNNKEGNG LDKSVSVKEK ANFLFDKSFG VAGLEDFILN NGLGMIGGVK RAELEERWKK  360
LQIAQLELFL QRNELMKEQA KLILDALKSS GN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449140.10.0hypothetical protein CICLE_v10015528mg
TrEMBLV4UDY20.0V4UDY2_9R
STRINGPOPTR_0009s09150.18e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-42DNA-binding storekeeper protein-related transcriptional regulator