PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11127_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 259aa    MW: 28857.3 Da    PI: 9.9354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11127_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05105127123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k Fs++  L  H++ H
  Neem_11127_f_1 105 FSCSFCNKNFSTSQALGGHQNAH 127
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5100131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.88E-7101132No hitNo description
PROSITE profilePS5015712.113105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MATSESSSIS ATSQDISPNK DKIITLVKEK FGEEEEEVVE RLKPRKSKSD LNLLFNQKQK  60
IAADDSVSES HEVELKLFSM GTSSQANQSS SHASIRKKQS GRRGFSCSFC NKNFSTSQAL  120
GGHQNAHKQE RALAKRRKEM DMGGGLGHHN FPYYPYSSIS QIPNFYGSFN RPPLGISMQS  180
MIRKPSYPWI PLRDRFANGK TVMNNNAQVA YDKLRLESVF QQAQNGSDFQ SFNGGGDTLK  240
GKNPLLHQDD SGLDLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421473.21e-89zinc finger protein 3
TrEMBLA0A067ETN73e-88A0A067ETN7_CITSI; Uncharacterized protein
STRINGXP_006421473.15e-76(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.15e-17C2H2 family protein