PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11104_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 352aa    MW: 39869.2 Da    PI: 5.139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11104_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.8e-30117178159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+++g++fpr+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  Neem_11104_f_2 117 LDDGYCWRKYGQKDIHGANFPRGYYRCTHRhaqGCLATKQVQRSDEDPTIFEVTYRGRHTCN 178
                     59***************************99999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28109179IPR003657WRKY domain
PROSITE profilePS5081123.33112175IPR003657WRKY domain
SuperFamilySSF1182908.24E-26116179IPR003657WRKY domain
SMARTSM007741.9E-41117179IPR003657WRKY domain
PfamPF031062.5E-26118177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDREQNILIN ELTQGKALAK QLRNHLNPSS SPETREFLIQ KILFSYEKAL SVLNYGASLK  60
PNLEVSILES PCSFPNSSPR SEASDQDSKD VYKKRKTMPR WTEQVKVCSG TGLEGPLDDG  120
YCWRKYGQKD IHGANFPRGY YRCTHRHAQG CLATKQVQRS DEDPTIFEVT YRGRHTCNQN  180
SHLALASTST KNEVSIEKKN RYSQQQEHEE SPKQGQEVML NFGTDLKVKT EDLDNEENIF  240
PSFSFPHNSI GQENVEDNLF SETMMENNFM GSFSPTFISP ATSESNYLSM SPCKMNNNFG  300
VGHNVQTPES DLTDIISTPT SVTNSPFGDF NFSLVKVDLD PNFQFDNLDC FT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20117177868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444876.10.0probable WRKY transcription factor 46
TrEMBLV4U7F50.0V4U7F5_9ROSI; Uncharacterized protein
STRINGXP_006444876.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-60WRKY DNA-binding protein 46