PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11100_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 173aa    MW: 19123.9 Da    PI: 8.7048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11100_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00144567123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  Neem_11100_f_1 45 FECKTCNRQFPSFQALGGHRASH 67
                    89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.33E-943111No hitNo description
PfamPF139122.8E-134469IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274572IPR007087Zinc finger, C2H2
SMARTSM003550.164567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.0E-988112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.57789122IPR007087Zinc finger, C2H2
SMARTSM003550.589111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKRSFPDPAE IDNSLTMANC LMLLSRGTDF DAMNGVNMTA ANRVFECKTC NRQFPSFQAL  60
GGHRASHKKP RLTDGNGGDT QSPAKPKTHE CSICGLEFAI GQALGGHMRR HRTASLHENE  120
KLPTLNLSDR APMVKKANSR RVLCLDLNLT PYENDLELYK IGTKTASVID CFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486058.24e-89zinc finger protein ZAT9-like
TrEMBLA0A2H5NYR76e-91A0A2H5NYR7_CITUN; Uncharacterized protein
TrEMBLV4TCK36e-91V4TCK3_9ROSI; Uncharacterized protein
STRINGXP_006486058.11e-91(Citrus sinensis)
STRINGXP_006436055.11e-91(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-41C2H2 family protein