PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10812_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TCP
Protein Properties Length: 329aa    MW: 34890.2 Da    PI: 6.2544
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10812_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP49.81.3e-15191112889
             TCP  28 caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..............................k 89 
                     +aa    +  eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++                              +
  Neem_10812_f_1  19 VAAPAVFMEIELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksvphsfhgalalaghhhhhyeegfphtA 111
                     55555555679********************************99988888888888555555555666666666665555555555544330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136911.075153IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-1817125IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MADQGRSSVQ YQSKLALHVA APAVFMEIEL GHKSDGETIE WLLQQAEPAI IAATGTGTIP  60
ANFSTLNVSL RSSGSTLSAP PSKSVPHSFH GALALAGHHH HHYEEGFPHT ALLGFHHPQQ  120
QQQQHHLMTA DQIAEALPSG ESVGGGGGGG GGDSSETYMR KRYREDLFKE DDNCNNNNNN  180
NNAQSQDESG GTGGGGEEGG RESSVNKAFK SSLQLPNKQQ QQQQQQVLSA PAMWAVAPAP  240
SSGAGSTFWM VTGASGAAAG PSEQQQQPQQ PQIWPFQHPA ATPSTATTLQ APLHFVPRFN  300
LPTGNLEFQT GRTANPLQLG SIFSSHELN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022762795.12e-99transcription factor TCP8-like
TrEMBLA0A067LE963e-95A0A067LE96_JATCU; Uncharacterized protein
STRINGEOX971607e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-30TCP family protein