PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1063_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 314aa    MW: 36154.5 Da    PI: 9.292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1063_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.5e-13301151699
                    EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  16 lvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    l +    ++e+        + +  ++k + l+d  gr+W  k+  ++ +g  v++++W++F++++ L+ gDf++Fk++g+s f   vk+f k
  Neem_1063_f_2  30 LFFDSLLLREYhqllpgiwMDQ--CQKHVFLRDYAGRRWHGKM--ENVDGVLVIKDCWERFAHQHSLEHGDFLIFKYNGSSLF--DVKIFGK 115
                    5555555555555555554333..7789***************..********************************998877..9999876 PP

2B348.31.8e-152133001299
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS
             B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 
                    ++  ++++ + +++hg+k  +   ++l d++g++W vkli+r ++gr+ +tkGW +F k n+L+ gD ++F+++  +   ++e++v+v+rk
  Neem_1063_f_2 213 SRYVMSISVPEVKAHGIK-LK-PNMMLLDQNGEKWPVKLIFR-TDGRIAMTKGWLDFWKNNKLDIGDKCLFEFVlgRGnISKEMKVQVVRK 300
                    455699999******766.34.48***************765.557899***********************5542334677788888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.86E-1511118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-1512118IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-417116IPR003340B3 DNA binding domain
PfamPF023622.5E-1051114IPR003340B3 DNA binding domain
CDDcd100174.45E-956113No hitNo description
PROSITE profilePS5086310.98356116IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-19200299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-18200299IPR015300DNA-binding pseudobarrel domain
CDDcd100174.18E-14203299No hitNo description
PROSITE profilePS5086311.885204301IPR003340B3 DNA binding domain
SMARTSM010197.7E-12205301IPR003340B3 DNA binding domain
PfamPF023625.2E-13214300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVKRSGKITP DDNNCEFFKV YLPAFSSKQL FFDSLLLREY HQLLPGIWMD QCQKHVFLRD  60
YAGRRWHGKM ENVDGVLVIK DCWERFAHQH SLEHGDFLIF KYNGSSLFDV KIFGKNGCRK  120
EETLIANMDT TNVKKEIETE GDQTFDGDDH ACKQEYSKTI LKTSEEIGSP SGASRIKTIK  180
RDATDLGECE AFKAAGYVVP RNPYFMSVLS QYSRYVMSIS VPEVKAHGIK LKPNMMLLDQ  240
NGEKWPVKLI FRTDGRIAMT KGWLDFWKNN KLDIGDKCLF EFVLGRGNIS KEMKVQVVRK  300
GAASANNQRR HLRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425800.11e-116putative B3 domain-containing protein At5g66980
RefseqXP_006466673.11e-116putative B3 domain-containing protein At5g66980
TrEMBLV4SJL31e-115V4SJL3_9ROSI; Uncharacterized protein
STRINGXP_006466673.11e-115(Citrus sinensis)
STRINGXP_006425800.11e-115(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-33B3 family protein