PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10585_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 240aa    MW: 27825.3 Da    PI: 7.7452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10585_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14108195196
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f+k +++s+v+   +l lp  f ++h        + t+tl de+ +++  k+  +k++    l++GW++F  +++L +gD +vF+l++ ++f  +
  Neem_10585_f_3 108 FVKPMLQSHVTGGFWLGLPVYFGKNHlpH----YDETITLVDEEENEFPTKYLADKTG----LSGGWRGFSIDHELVDGDALVFQLVKPTTF--K 192
                     89*********************888433....4459***************666666....***********************9986666..5 PP

                     EEE CS
              B3  94 vkv 96 
                     v +
  Neem_10585_f_3 193 VFI 195
                     544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-24101198IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-20101198IPR015300DNA-binding pseudobarrel domain
CDDcd100177.06E-25106197No hitNo description
SMARTSM010195.2E-19108200IPR003340B3 DNA binding domain
PfamPF023627.1E-13108196IPR003340B3 DNA binding domain
PROSITE profilePS5086311.364108199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVESKLTYEE CRRQRLEENK KRMEELKLHV LAQSIKTPSP KPSPLKKRFS KQQAASVPDP  60
FEPLLTRRRG YQQRNLLNRV YASDEERAYA IERAEEVQSG LDSQYPSFVK PMLQSHVTGG  120
FWLGLPVYFG KNHLPHYDET ITLVDEEENE FPTKYLADKT GLSGGWRGFS IDHELVDGDA  180
LVFQLVKPTT FKVFIIRAYE LEDNKNKDNT KEETNSEDKN EDSDANHLRR SAKRTRSGKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487088.11e-128B3 domain-containing protein At3g19184-like isoform X2
SwissprotQ1G3M35e-78Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A067DTV81e-127A0A067DTV8_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006487087.11e-126(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-65B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]